the thing I like about my 4dr is the lack of wind noise from the softtop (I own a 96 Tracker)...
Then there is the extra room to carry stuff...
The ride is a lot better...
Bigger front disk brakes...
I have a Samurai to drive if I want to go offroading (or otherwise abouse my 55-year-old body) and the '93 4-door 'Kick for the creature comforts...
I haven't put any effort into finding out what fits although there is something different about it to the extent that there is a different version of aftermarket front bumper for a 4-door.
One way to check ot the differences is to visit the vendor sites (on the homepage here at ZukiWorld) and see if there are different versions of lifts, body armor, etc.
Someday, I'll convert the 4-door. But anytime soon!