If the spring doesn't colapse or bind coil on coil, it would more than likely be the shock. Regardless of how much of a spacer you have in there the bump stop hasn't changed. That's what stops the axle from moving up more. Therefore it requires extended bumpstops or altered shock mounts to not bottom the shocks out. Not too big of a deal, unless your jumping it or carring a heavy load. I've driven mine for ~6 months without wrecking the Crown Vic shocks, with no spacers, or bumpstop extensions. However, that doesn't mean its a good idea. The Crown Vic shocks, are cheap, and I'm busy, thats why I have fixed mine yet.
I guess with the coil spacers, the force required to fully compress the springs is greater, therefore decreasing the possibility of shock bottoming.