the front you want to look at the king pins from the side and make sure the top one is leaning back twards the windshield just a little bit, mine the flange points directly inline with the driveshaft, is this what ur talking about?
The easiest way to get the front EXACTLY right is to weld the new pads on so that the surface of the new perch where the spring rests is EXACTLY (can I use the word EXACTLY one more time in this sentence??? It is that important!) parallel to the surface of the original perch (assuming you haven't ground it off yet). You can determine this by using a inclinometer (one of those round-faced angle gages with a flat magnetic base). Clamp it onto the face of your old perch at right angles to the axis of the axle and note the angle. Without rotating or otherwise changing the axle's position, remove the inclinometer and slap it onto the new perch and adjust the perch's position on the axle until the inclinometer reads EXACTLY (!) 180 degrees opposite of the first reading. Weld.
If you change the pinion angle on the front axle in any way (especially in the tempting "raise the rear of the third member up so the flange is square to the driveshaft", you will mess up the handling! The most common result of changing the front pinion angle is that the wheels will start acting like the bent front casters on a banged-up shopping cart -- wobble-wobble-wobble.
Naturally, if you have cut off the old perches, you have your work cut out for you. mrfuelish's explanation covers that situation. You can find the exact angle measurements on my FAQ website:
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http://www.ackerdackerly.com/samurai/indexFAQ.html.
Scroll down the contents frame on the left until you see "Samurai Drivetrain". The information is in the first article, "Caster Angle in Steering Specification Table".
I hope this helps!