Yes, i had stick originally. If you get a complete donor vehicle everything will work out except the rear driveshaft? Of course it will be alot more work. If you don't get a complete vehicle i wouldn't do it. I doubt you will want to go back to stick once you drive it with a auto. If the 99 and up are the same as mine, the pedal brackets are the same from auto to stick,i just removed the clutch pedal and replaced the brake pedal with a auto pedal(wider).
If your looking for a quick swap i would stick with the manual trans. Stu.