I'm running into a similar problem re-wiring the Tracker I just got. Does the fuel pump hot wire go straight from the relay to the pump, or does it route through the ECM along the way? Based off the voltage I'm getting, I suspect a bad relay...
Edit: well, after further digging around, I found the fuel pump relay. I determined that it's getting power in on the switched circut, but it's not sending any power out. The relay itself tests fine out of the vehicle, it switches on and off with 12 volt power applied to the coil terminals, but in the vehicle it's not getting the signal to switch on... Now I'm starting to suspect bad ECM. The fuse must be good if the switched side is getting 12 volt power in, right? I'm about ready to wire in a switch to turn on the pump...